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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37512291_37512825_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37512291 - 37512825
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTACTGCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
ACTACTTTAACT
Flanking Amino Acid:
CRSSLLPEGLDDDMHLSRPF
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
72.4
0.5
0.9
66.7
35.3
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
75.2
0.87
1.2
82.96
38.2

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080