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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37514497_37515609_F

Intron Information:

Intron Rank:
19
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
37514497 - 37515609
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TACTTGATATCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTGCCTTAATC
Flanking Amino Acid:
NIEENDKHAITIYLLLDIMH
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
57.1
42.4
Major BPS
75
0.62
1
65.3
41.5
Major PPT
69.3
0.44
1
67.4
42.2
Minor 5ss
98.8
1.64
0.5
96
12.5
Minor BPS
82.2
0.99
1.2
86.11
32.2

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080