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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37515757_37516489_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37515757 - 37516489
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTAACTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTATCTTAATA
Flanking Amino Acid:
FWLLDHNDYENSLALLFHPA
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.6
0.64
0.9
72
37.6
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
72.5
0.7
1.2
75.33
36.5

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080