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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37516991_37517083_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37516991 - 37517083
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTTTTCTGAAAT
Flanking Amino Acid:
LKLPFTDSEQECLEKFLQTN
Intron Amino Acid Position:
936

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.7
0.69
0.8
76.9
31.6
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
67.2
0.62
1.5
83.04
37.3

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080