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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37519852_37520454_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37519852 - 37520454
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
TGTATCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTATCTTAACA
Flanking Amino Acid:
PITKFSQKCSRLLDSVVRPV
Intron Amino Acid Position:
1116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.9
0.56
1
69.9
40.2
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
77
0.84
1.2
80.82
34.2

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080