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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37523618_37525404_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37523618 - 37525404
Intron Length:
1787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTGTTCC
5'SS Class:
major
3'SS Sequence:
TCTATTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
TDSSEPRKEAGYLEESTTEC
Intron Amino Acid Position:
1392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
0.9
66.3
33.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.7
0.76
0.8
77
37.1
Minor 5ss
42.2
-0.9
2.6
50
41.8
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080