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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37526476_37527092_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37526476 - 37527092
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
AAATCTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTAAGTTTAAAT
Flanking Amino Acid:
LSESPEADSESVISILDSED
Intron Amino Acid Position:
1462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.1
0.52
1
63
43
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
54.9
0.23
1.9
74.87
41.6

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080