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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37530517_37531294_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37530517 - 37531294
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTATCATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AATTCATTATCA
Flanking Amino Acid:
PLTKLSKKVKAGKADHPVQL
Intron Amino Acid Position:
2135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.8
0.56
0.9
71.8
38.5
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
60.2
0.31
1.9
72.71
38.5

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080