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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37532003_37532874_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37532003 - 37532874
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
GCTGGTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TTGTTGATAATC
Flanking Amino Acid:
TAKSKANKTSKTTRKEGSWS
Intron Amino Acid Position:
2215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
70.6
33.3
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
71.2
0.48
1
63.8
41.7
Minor 5ss
41.6
-0.9
2.8
52.3
38.9
Minor BPS
48.4
-0.1
2.2
66.31
40

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080