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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37562604_37563070_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37562604 - 37563070
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTCTTGTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTCTTGTTAACA
Flanking Amino Acid:
LLEDTAYLPKQGGVYSPGAA
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
80.3
0.68
0.9
76.6
36.3
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
65.5
0.48
2.1
78.35
38.8

Associated Gene:

Gene:
SCCPDH
Ensembl Gene ID:
ENSAPLG00000004893
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005044
37562417 - 37570985
8569