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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37563153_37563680_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37563153 - 37563680
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGTATG
5'SS Class:
major
3'SS Sequence:
TGGTTTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TGTGTTTCAACA
Flanking Amino Acid:
VKICTQVKGPEPGYVATPIA
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
72.9
44.2
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
75.2
0.57
1
74.7
40
Minor 5ss
37.8
-1.4
3
42.4
44.5
Minor BPS
56.4
0.2
1.6
67.57
39.2

Associated Gene:

Gene:
SCCPDH
Ensembl Gene ID:
ENSAPLG00000004893
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005044
37562417 - 37570985
8569