About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37564369_37564470_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37564369 - 37564470
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATTATAT
Flanking Amino Acid:
FSFGRKLLTKYPEFFSAGRF
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74
0.54
0.9
69.1
35.8
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
49.6
0.05
2
70.21
46.2

Associated Gene:

Gene:
SCCPDH
Ensembl Gene ID:
ENSAPLG00000004893
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005044
37562417 - 37570985
8569