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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37565852_37566359_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37565852 - 37566359
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
TTTCCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTGTGAATG
Flanking Amino Acid:
VPVVGAKLKRRGFVFYSQEF
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
86.6
0.82
0.7
81.2
29.4
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
52.3
-0
2.2
67.49
40.7

Associated Gene:

Gene:
SCCPDH
Ensembl Gene ID:
ENSAPLG00000004893
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005044
37562417 - 37570985
8569