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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37569312_37569806_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37569312 - 37569806
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTTCCTTCTACA
Flanking Amino Acid:
TRLVLNCVGPYRFFGEPVVK
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
89.1
0.88
0.6
84.1
24.1
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
55.8
0.17
1.9
73.32
38

Associated Gene:

Gene:
SCCPDH
Ensembl Gene ID:
ENSAPLG00000004893
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005044
37562417 - 37570985
8569