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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37596404_37600571_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37596404 - 37600571
Intron Length:
4168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
CTTCTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGGTTCTTCATA
Flanking Amino Acid:
FQEMDDTFDQDEVAGGSCIL
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86
0.81
0.8
80
30.8
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
57.8
0.24
1.7
67.12
40

Associated Gene:

Gene:
CNST
Ensembl Gene ID:
ENSAPLG00000014445
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038766
37596198 - 37640664
44467
ENSAPLT00000015051
37596198 - 37636976
40779