Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37614838_37617009_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37614838 - 37617009

Intron Length:

2172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

TTTACTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTTTTCTTTACT

Flanking Amino Acid:

KLTKVCSSHQQPQAPKNKPV

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

77.3

32.8

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

79.5

0.66

0.9

73.6

36.8

Minor 5ss

37.2

-1.4

2.8

47.9

41.8

Minor BPS

79.9

1.02

1.5

95.83

29.9

Associated Gene:

Gene:

CNST

Ensembl Gene ID:

ENSAPLG00000014445

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038766

37596198 - 37640664

44467

ENSAPLT00000015051

37596198 - 37636976

40779