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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37632096_37636954_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37632096 - 37636954
Intron Length:
4859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTATATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTATTATAAAT
Flanking Amino Acid:
MCLERSKRLKISGGGLS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
74.8
38.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84
0.76
0.8
82.6
33.4
Minor 5ss
40.7
-1
3.3
56.4
42
Minor BPS
50.2
0.08
1.7
71.52
38.9

Associated Gene:

Gene:
CNST
Ensembl Gene ID:
ENSAPLG00000014445
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015051
37596198 - 37636976
40779