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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37687515_37695885_F

Intron Information:

Intron Rank:
1
Intron Class:
major_hybrid
Intron Phase:
0
Intron Coordinates:
37687515 - 37695885
Intron Length:
8371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TAAAAAAAAAAAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTTCTTAAAA
Flanking Amino Acid:
VAKYCGKSCQKEAWLDHKQE
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
44.1
-0.3
1.1
33.2
38
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
75.9
0.81
1.3
80.08
35.8

Associated Gene:

Gene:
SMYD3
Ensembl Gene ID:
ENSAPLG00000028273
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015105
37687293 - 37703325
16033
ENSAPLT00000036973
37687293 - 37826916
139624
ENSAPLT00000042439
37686834 - 37704036
17203
ENSAPLT00000028514
37687293 - 37901035
213743
ENSAPLT00000026512
37687293 - 37745142
57850
ENSAPLT00000040651
37687293 - 37716091
28799
ENSAPLT00000025073
37687293 - 38035285
347993
ENSAPLT00000037604
37686834 - 37713848
27015