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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37702251_37709566_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37702251 - 37709566
Intron Length:
7316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CTTGCTTTACCA
Flanking Amino Acid:
AIDFFQIFTKAKVSLSFQRK
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
75.7
0.58
0.9
66.8
39.4
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
59.8
0.3
1.8
70.26
42.8

Associated Gene:

Gene:
SMYD3
Ensembl Gene ID:
ENSAPLG00000028273
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036973
37687293 - 37826916
139624