Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37702251_37713647_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37702251 - 37713647

Intron Length:

11397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTGCATTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTTCAT

U12 Branch Point Sequence:

ATTTCTTGCATT

Flanking Amino Acid:

AIDFFQIFTKVRFLIQHVLS

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

88.1

25.2

Major BPS

72.4

0.56

1.2

39.9

Major PPT

79.8

0.67

0.9

72.6

36.6

Minor 5ss

40.3

-1.1

3.4

58.5

40.4

Minor BPS

56.3

0.28

1.9

78.9

37.7

Associated Gene:

Gene:

SMYD3

Ensembl Gene ID:

ENSAPLG00000028273

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040651

37687293 - 37716091

28799

ENSAPLT00000037604

37686834 - 37713848

27015