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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37709620_37826077_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
37709620 - 37826077
Intron Length:
116458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTATT
5'SS Class:
major
3'SS Sequence:
AAAATTCCAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATTAAAT
Flanking Amino Acid:
QRKLDWASAHCK*
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
79.6
35.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
59.4
0.21
1
52.4
41.6
Minor 5ss
35
-1.7
3.2
47.2
42.9
Minor BPS
54.1
0.21
1.9
74.32
41.6

Associated Gene:

Gene:
SMYD3
Ensembl Gene ID:
ENSAPLG00000028273
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036973
37687293 - 37826916
139624