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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37952307_37954544_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37952307 - 37954544
Intron Length:
2238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTGA
5'SS Class:
major
3'SS Sequence:
CCACCATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCTCCAACT
Flanking Amino Acid:
MQDVGVGLYPSMSLLNHSCD
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.4
42
Major BPS
77.7
0.69
1
81
30.2
Major PPT
72.3
0.5
0.9
65.1
34.9
Minor 5ss
34.8
-1.7
3.5
47.2
48.2
Minor BPS
58.6
0.35
1.9
80.84
41

Associated Gene:

Gene:
SMYD3
Ensembl Gene ID:
ENSAPLG00000028273
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025073
37687293 - 38035285
347993