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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37983766_37987319_F

Intron Information:

Intron Rank:
9
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
37983766 - 37987319
Intron Length:
3554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCTTT
5'SS Class:
weak_minor
3'SS Sequence:
AGGCCAATAACAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
ATTTCTTTAACT
Flanking Amino Acid:
NEVRYPKSKEEWEQVLARCQ
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
71.4
41.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
53
0.07
1.1
44.9
39.8
Minor 5ss
89.8
1.34
1.2
90.9
28.7
Minor BPS
90.2
1.34
0.8
98.4
23.8

Associated Gene:

Gene:
SMYD3
Ensembl Gene ID:
ENSAPLG00000028273
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025073
37687293 - 38035285
347993