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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37987495_38028221_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37987495 - 38028221
Intron Length:
40727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACACAT
U12 Branch Point Sequence:
GACACAGTGACA
Flanking Amino Acid:
CYGNRTLGPYRLYYPGFHPL
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
52.1
0.05
1.2
61
37.5
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
42.1
-0.6
2.2
50.09
40.6

Associated Gene:

Gene:
SMYD3
Ensembl Gene ID:
ENSAPLG00000028273
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025073
37687293 - 38035285
347993