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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38028331_38034354_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38028331 - 38034354
Intron Length:
6024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
CAATGACTAATG
Flanking Amino Acid:
FPQALETLKEAYNIMKVTHG
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
84.2
0.77
0.7
76.5
32.2
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
40.2
-0.8
2.2
43.3
42

Associated Gene:

Gene:
SMYD3
Ensembl Gene ID:
ENSAPLG00000028273
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025073
37687293 - 38035285
347993