About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38053657_38054610_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38053657 - 38054610
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
CTTTTTCTACCT
Flanking Amino Acid:
MLDPNKWLSEFDLEQVFELD
Intron Amino Acid Position:
1937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
74.4
35.6
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
89.1
0.88
0.6
84.2
24
Minor 5ss
35
-1.7
3.2
45.6
42.5
Minor BPS
51.6
0.13
1.9
75.41
41.9

Associated Gene:

Gene:
KIF26B
Ensembl Gene ID:
ENSAPLG00000012419
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012939
38053508 - 38337902
284395
ENSAPLT00000027713
38053508 - 38279944
226437
ENSAPLT00000023382
38053508 - 38337902
284395
ENSAPLT00000021918
38053508 - 38135540
82033