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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38056277_38069014_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38056277 - 38069014
Intron Length:
12738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
AATTTCTGCATT
Flanking Amino Acid:
LKNPKKRSNAGSQRRRLIPA
Intron Amino Acid Position:
1819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
79.8
0.67
0.9
73.3
36.1
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
50.5
0.1
1.9
72.02
39.1

Associated Gene:

Gene:
KIF26B
Ensembl Gene ID:
ENSAPLG00000012419
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012939
38053508 - 38337902
284395
ENSAPLT00000027713
38053508 - 38279944
226437
ENSAPLT00000023382
38053508 - 38337902
284395
ENSAPLT00000021918
38053508 - 38135540
82033