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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38073719_38101130_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38073719 - 38101130
Intron Length:
27412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCAGCCTTAATT
Flanking Amino Acid:
LVNGSKHIPYKDSKLTMLLR
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
67.4
0.62
1.4
73.32
43.8

Associated Gene:

Gene:
KIF26B
Ensembl Gene ID:
ENSAPLG00000012419
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023382
38053508 - 38337902
284395
ENSAPLT00000021918
38053508 - 38135540
82033
ENSAPLT00000012939
38053508 - 38337902
284395
ENSAPLT00000027713
38053508 - 38279944
226437