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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38101291_38106211_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38101291 - 38106211
Intron Length:
4921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
TTGTTTATGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTTGTTTATG
Flanking Amino Acid:
YRMEKSGKGGMSGGRSRLHL
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
66.9
40
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.5
0.6
1
74.1
40.3
Minor 5ss
45.9
-0.4
2.8
59.2
39.8
Minor BPS
46.8
-0.4
2.3
58.03
44.3

Associated Gene:

Gene:
KIF26B
Ensembl Gene ID:
ENSAPLG00000012419
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023382
38053508 - 38337902
284395
ENSAPLT00000021918
38053508 - 38135540
82033
ENSAPLT00000012939
38053508 - 38337902
284395
ENSAPLT00000027713
38053508 - 38279944
226437