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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38106396_38109366_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38106396 - 38109366
Intron Length:
2971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTAACCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
CCTGTGTTAACC
Flanking Amino Acid:
LCEDPICGMQLQNQSELRAP
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
70
35.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
69.7
0.44
0.9
59.6
41.6
Minor 5ss
28.4
-2.5
2.8
33.3
41.7
Minor BPS
49.2
-0
2.2
60.68
45.3

Associated Gene:

Gene:
KIF26B
Ensembl Gene ID:
ENSAPLG00000012419
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012939
38053508 - 38337902
284395
ENSAPLT00000027713
38053508 - 38279944
226437
ENSAPLT00000023382
38053508 - 38337902
284395
ENSAPLT00000021918
38053508 - 38135540
82033