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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38111828_38113010_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38111828 - 38113010
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATACCTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
DAVFPQDASQAEVCAGTVAE
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
74.1
38.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
72.4
0.5
1
65
40.5
Minor 5ss
37.3
-1.4
3.1
47.6
48.1
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
KIF26B
Ensembl Gene ID:
ENSAPLG00000012419
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021918
38053508 - 38135540
82033
ENSAPLT00000012939
38053508 - 38337902
284395
ENSAPLT00000027713
38053508 - 38279944
226437
ENSAPLT00000023382
38053508 - 38337902
284395