About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38337765_38337839_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38337765 - 38337839
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCCGCCTGACCC
Flanking Amino Acid:
AGTARSRKYGVTEPCSPTKP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
43.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
79.1
0.66
0.8
73.3
31.7
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
45.7
-0.3
1.9
50.11
46.6

Associated Gene:

Gene:
KIF26B
Ensembl Gene ID:
ENSAPLG00000012419
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023382
38053508 - 38337902
284395