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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38358922_38359938_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38358922 - 38359938
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTGA
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATCAAGA
Flanking Amino Acid:
DELVKHMTEEGEPFTEEEIE
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.6
41.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
41.6
-0.9
3.2
56.2
47.9
Minor BPS
48.5
-0.1
2
65.79
40.3

Associated Gene:

Gene:
EFCAB2
Ensembl Gene ID:
ENSAPLG00000012390
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012893
38358791 - 38389495
30705