About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38360006_38360107_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38360006 - 38360107
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TTTCTTTTAAAG
Flanking Amino Acid:
PEDVLLHAFEALDENKCGYL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
79.2
29
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
84.1
0.77
0.9
86.1
25.6
Minor 5ss
36.7
-1.5
2.6
44.4
43.7
Minor BPS
65.1
0.33
1.4
69.62
37.6

Associated Gene:

Gene:
EFCAB2
Ensembl Gene ID:
ENSAPLG00000012390
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012893
38358791 - 38389495
30705