Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38360151_38362010_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38360151 - 38362010

Intron Length:

1860

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGGAA

5'SS Class:

major

3'SS Sequence:

TTAATGGTTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

CGACTCTTAACT

Flanking Amino Acid:

PVMTKVLLDRSYRPIPEDVL

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.1

62.1

38.4

Major BPS

78.2

0.7

77.9

32.1

Major PPT

73.4

0.53

69.5

45.7

Minor 5ss

27.2

-2.6

3.6

37.2

47.5

Minor BPS

0.64

1.3

74.9

41.4

Associated Gene:

Gene:

EFCAB2

Ensembl Gene ID:

ENSAPLG00000012390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012893

38358791 - 38389495

30705