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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38410734_38413685_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
38410734 - 38413685
Intron Length:
2952

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCGGCGGCG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTGTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATA
Flanking Amino Acid:
KQQQQKKAEGDNCDLHFKIS
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.3
49
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.4
0.77
0.9
81
35.4
Minor 5ss
18.4
-3.6
4.2
28.9
43.7
Minor BPS
74.3
0.76
1.5
84.09
29.2

Associated Gene:

Gene:
HNRNPU
Ensembl Gene ID:
ENSAPLG00000012268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036607
38410037 - 38422045
12009