Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38410773_38411139_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

38410773 - 38411139

Intron Length:

367

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

GTCCCCGCAGGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCCTGAC

U12 Branch Point Sequence:

CCTGCCTGACGC

Flanking Amino Acid:

GGRPGAQGAGEGKAEQKPGE

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

65.8

40.2

Major BPS

51.1

0.03

1.2

39.9

Major PPT

45.6

-0.2

1.7

47.2

35.3

Minor 5ss

27.1

-2.6

2.9

24.3

36.8

Minor BPS

-0.5

2.1

50.11

46.6

Associated Gene:

Gene:

HNRNPU

Ensembl Gene ID:

ENSAPLG00000012268

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012801

38410037 - 38422045

12009