About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38418794_38419329_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38418794 - 38419329
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCATGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCAATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
GTTTTTGCAATT
Flanking Amino Acid:
LPEHAVLKMKGNFTLPEVAE
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.86
1
74.3
39.4
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
73.6
0.53
0.9
67
38.3
Minor 5ss
28.3
-2.5
4
41.6
45.4
Minor BPS
48.2
-0
2.1
71.95
39.8

Associated Gene:

Gene:
HNRNPU
Ensembl Gene ID:
ENSAPLG00000012268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012801
38410037 - 38422045
12009
ENSAPLT00000012794
38409766 - 38422045
12280
ENSAPLT00000036607
38410037 - 38422045
12009