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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38419570_38420038_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38419570 - 38420038
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
CTAACAGTGACT
Flanking Amino Acid:
FNMRGNFRGGVPGNRGGYNR
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.1
38.4
Major BPS
75
0.62
1
65.3
41.5
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
36
-1.6
3.2
47
48.3
Minor BPS
45.2
-0.2
2.3
65.87
44.5

Associated Gene:

Gene:
HNRNPU
Ensembl Gene ID:
ENSAPLG00000012268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012801
38410037 - 38422045
12009
ENSAPLT00000012794
38409766 - 38422045
12280
ENSAPLT00000036607
38410037 - 38422045
12009