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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38420242_38421536_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38420242 - 38421536
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TAGTTCAAAACT
Flanking Amino Acid:
GMPNRGNYNQNFRGRGNNRG
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
84
0.76
0.8
81
31
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
52.3
0.15
2
73.57
43.2

Associated Gene:

Gene:
HNRNPU
Ensembl Gene ID:
ENSAPLG00000012268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036607
38410037 - 38422045
12009
ENSAPLT00000012801
38410037 - 38422045
12009
ENSAPLT00000012794
38409766 - 38422045
12280