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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38421609_38421991_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38421609 - 38421991
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CCGTTTATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTAATTTTAACT
Flanking Amino Acid:
SQGYNQWQQGQFWGQKPWSQ
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
80
34.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.8
0.65
0.9
73.1
35.9
Minor 5ss
39.4
-1.2
2.9
52.2
44.4
Minor BPS
74.4
0.84
1.2
85.12
34.9

Associated Gene:

Gene:
HNRNPU
Ensembl Gene ID:
ENSAPLG00000012268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012794
38409766 - 38422045
12280
ENSAPLT00000036607
38410037 - 38422045
12009
ENSAPLT00000012801
38410037 - 38422045
12009