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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38434712_38435295_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38434712 - 38435295
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTCTTTTTGTCT
Flanking Amino Acid:
GGFICTMLGYWFYCRYILAK
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.4
38.6
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
78.2
0.63
0.8
70.7
36.1
Minor 5ss
41.3
-1
2.5
48.1
42.7
Minor BPS
46
-0.2
3.4
77.67
39.7

Associated Gene:

Gene:
DESI2
Ensembl Gene ID:
ENSAPLG00000012155
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043795
38434487 - 38468676
34190