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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38435612_38459856_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38435612 - 38459856
Intron Length:
24245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATATTTTAATGT
Flanking Amino Acid:
CNHFSSALSESFKLLGFLDV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
44
-0.3
2
61.89
42.7

Associated Gene:

Gene:
DESI2
Ensembl Gene ID:
ENSAPLG00000012155
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043795
38434487 - 38468676
34190