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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38457940_38459856_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38457940 - 38459856
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
GACAAGTTAATC
Flanking Amino Acid:
CNHFSSALSEILCGKEIPRW
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
68.6
0.42
0.8
61.1
35.1
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
43.8
-0.4
2.1
50.03
40.3

Associated Gene:

Gene:
DESI2
Ensembl Gene ID:
ENSAPLG00000012155
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012659
38456706 - 38469440
12735