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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38459999_38460730_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38459999 - 38460730
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTTCTAATCT
Flanking Amino Acid:
ASELGETFKFKEAVVLGSTD
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
60
0.39
1.9
81.65
40.2

Associated Gene:

Gene:
DESI2
Ensembl Gene ID:
ENSAPLG00000012155
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043795
38434487 - 38468676
34190
ENSAPLT00000012659
38456706 - 38469440
12735