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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38460825_38462655_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38460825 - 38462655
Intron Length:
1831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTTTTTAACC
Flanking Amino Acid:
FHSGIEVYGREFAYGGHPYP
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
81.3
0.96
1
84.09
27.8

Associated Gene:

Gene:
DESI2
Ensembl Gene ID:
ENSAPLG00000012155
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043795
38434487 - 38468676
34190
ENSAPLT00000012659
38456706 - 38469440
12735