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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38462729_38468637_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38462729 - 38468637
Intron Length:
5909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
ACTAACTAGAGC
Flanking Amino Acid:
QLVVLNVYDMYWMNEYTSSL
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
41.6
-0.6
2
49.36
41.1

Associated Gene:

Gene:
DESI2
Ensembl Gene ID:
ENSAPLG00000012155
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043795
38434487 - 38468676
34190
ENSAPLT00000012659
38456706 - 38469440
12735