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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38498932_38512109_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38498932 - 38512109
Intron Length:
13178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTATCAAGAACT
Flanking Amino Acid:
QDADIVCRCQGGNNAGHTVV
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
49.3
0.03
2
73.75
41.7

Associated Gene:

Gene:
ADSS2
Ensembl Gene ID:
ENSAPLG00000011820
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030661
38498556 - 38532445
33890
ENSAPLT00000012361
38498556 - 38534028
35473