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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38512213_38514627_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38512213 - 38514627
Intron Length:
2415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTAAAT
Flanking Amino Acid:
IINPKVTAFIGNGVVIHLPG
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.5
0.75
0.8
81.5
36
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
67.8
0.64
1.7
82.92
37

Associated Gene:

Gene:
ADSS2
Ensembl Gene ID:
ENSAPLG00000011820
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030661
38498556 - 38532445
33890
ENSAPLT00000012361
38498556 - 38534028
35473