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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38531077_38531816_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38531077 - 38531816
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TTATGTATAATA
Flanking Amino Acid:
RFIERELGVPVKWIGVGKSR
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
86.1
0.81
0.7
81.1
24
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
51.6
0.05
2
68.79
37.9

Associated Gene:

Gene:
ADSS2
Ensembl Gene ID:
ENSAPLG00000011820
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030661
38498556 - 38532445
33890